Author

I-Min A. Chen

Lawrence Berkeley National LaboratoryORCID 0000-0003-2026-9798Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Ecology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:clustering· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1

Frequent Co-Authors

Emiley A. Eloe‐FadroshiD· 3 shared Marcel HuntemanniD· 3 shared Natalia IvanovaiD· 3 shared Nikos C. KyrpidesiD· 3 shared Simon RouxiD· 3 shared Supratim MukherjeeiD· 3 shared T. B. K. ReddyiD· 3 shared Alex CopelandiD· 2 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersEcology

Emiley A. Eloe‐FadroshORCID

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3 papers

Recent·Most cited

EcologymSystemsPeer-reviewedJul 8, 2025

Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomes

Matthew Kellom, Maureen Berg, I-Min A. Chen…·Emiley A. Eloe‐Fadrosh

The paper develops a tool to analyze tetranucleotide frequencies in metagenomes, revealing environmental-specific microbial community patterns and metabolic trends across 12,000 samples.

1 citation

metagenomicsstatistical model

𝕏 PostBluesky

EcologyScientific DataPeer-reviewedNov 22, 2024

Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle:High-Resolution Sampling Every 4 Hours Over 22 Days

Brook L. Nunn, Emma Timmins‐Schiffman, Miranda C. Mudge…·Emiley A. Eloe‐Fadrosh

The paper describes a high-resolution microbial metagenome dataset collected over 22 days during a phytoplankton bloom cycle, including gene abundances and time-matched environmental data.

7 citations

metagenomicsexperimental assay

𝕏 PostBluesky

BioinformaticsmSystemsPeer-reviewedMay 17, 2021

The DOE JGI Metagenome Workflow

Alicia Clum, Marcel Huntemann, Brian Bushnell…·Natalia Ivanova

The paper describes a metagenome processing workflow that includes assembly, annotation, and binning, and provides tools for researchers to apply it to their data.

129 citationstop 2%

metagenomicsstatistical model

𝕏 PostBluesky