Emiley A. Eloe‐Fadrosh

The paper analyzes CRISPR spacers from metagenomic data to reveal patterns of CRISPR targeting across Earth's biomes, identifying selection pressures and non-host phage interactions.

This study uses machine learning to predict symbiotic lifestyles in microbial genomes, identifying 15-23% of uncultivated microbes as potential symbionts and creating a new catalog of symbiont genomes.

This study uses SIP-viromics to distinguish newly produced from persistent virions in soil, revealing that most virions persist without replication, linked to dominant bacterial groups.

The paper shows that microbial blooms during snowmelt drive nitrogen transformations, increasing nitrogen retention through organic and inorganic pathways.

The paper investigates the distribution and ecological role of MCR-encoding Thermoproteota in anoxic ecosystems and highlights the need for experimental studies to understand their contribution to methane production.

This study investigates how Asparagopsis supplementation affects rumen microbiota, finding reduced methane production and changes in microbial gene expression and function.

This study investigates microbial networks in northern peatlands under warming, finding resilience and alternative electron acceptor acquisition from soil organic matter.

The paper develops a tool to analyze tetranucleotide frequencies in metagenomes, revealing environmental-specific microbial community patterns and metabolic trends across 12,000 samples.

The paper describes a high-resolution microbial metagenome dataset collected over 22 days during a phytoplankton bloom cycle, including gene abundances and time-matched environmental data.

The paper expands the global RNA virome by five-fold, identifying new clades of RNA bacteriophages and revealing novel virus-host interactions.

The paper describes a metagenome processing workflow that includes assembly, annotation, and binning, and provides tools for researchers to apply it to their data.

CheckV estimates completeness of metagenome-assembled viral contigs against GenBank plus 76,262 metagenome-derived complete genomes and trims host flanks; 86.9% of IMG/VR contigs were low-quality.

This study evaluates the effect of Asparagopsis taxiformis on methane production and rumen microbiome in dairy cattle, finding a 95% reduction in methane with no negative impact on fermentation parameters.