Author

Shuyun Deng

Centre National de la Recherche ScientifiqueORCID 0000-0003-2039-8311Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:protein sequence· 1 Assay:protein structure· 1 Approach:statistical model· 1 Organism:yeast· 1

Frequent Co-Authors

Chloé QuignotiD· 1 shared Déborah Antonio· 1 shared Jessica AndréaniiD· 1 shared Martin Pagani· 1 shared Qian Gui· 1 shared Rebecca KoundriiD· 1 shared Waifang CaoiD· 1 shared Wenbing JiangiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Chloé QuignotORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 30, 2026

Bridging the gap between omics and structural data: A framework for interpreting protein-RNA interaction specificity

Yoann Fauconnet, Shuyun Deng, Rebecca Koundri…·Jessica Andréani

This paper evaluates AlphaFold3's ability to predict protein-RNA interaction specificity using omics data and structural information, highlighting both its potential and limitations.

DOI 10.64898/2026.09.24.754079

protein structureprotein sequence

𝕏 PostBluesky

GenomicsMolecular Biology and EvolutionPeer-reviewedApr 14, 2021

Transcriptome Analysis in Yeast Reveals the Externality of Position Effect

Qian Gui, Shuyun Deng, Zhenzhen Zhou…·Xiaoshu Chen

The paper analyzes transcriptome profiles of yeast strains with GFP insertions to show how genomic context affects gene expression and cellular growth.

11 citations

yeastbulk RNA-seq

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