Author

Uciel Chorostecki

Barcelona Supercomputing CenterORCID 0000-0003-2229-6853Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Approach:statistical model· 2 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Organism:human· 1 Organism:plant (other)· 1

Frequent Co-Authors

Toni GabaldóniD· 2 shared André CorveloiD· 1 shared Bee Ling NgiD· 1 shared Beiyuan FuiD· 1 shared Belén MoroiD· 1 shared Benjamin Hubert· 1 shared Blake C. MeyersiD· 1 shared Claudia HöbartneriD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersGenomics

Toni GabaldónORCID

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4 papers

Recent·Most cited

GenomicsBMC BiologyPeer-reviewedJul 18, 2025

A chromosome-level genome assembly of the Hispid cotton rat (Sigmodon hispidus), a model for human pathogenic virus infections

Jingtao Lilue, André Corvelo, Jèssica Gómez‐Garrido…·Stefan Niewiesk

The paper presents a chromosome-level genome assembly of the Hispid cotton rat, annotating 24,878 protein-coding genes and identifying genetic innovations.

2 citations

ratwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsBriefings in BioinformaticsPeer-reviewedMay 23, 2024

sincFold: end-to-end learning of short- and long-range interactions in RNA secondary structure

Leandro A. Bugnon, Leandro Ezequiel Di Persia, Matias F. Gerard…·Diego Humberto Milone

sincFold is a deep learning model that predicts RNA secondary structure contact matrices from sequences, outperforming existing methods on benchmark datasets.

14 citations

deep learningprotein structure prediction

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GenomicsComputational and Structural Biotechnology JournalPeer-reviewedJan 1, 2021

Structural characterization of NORAD reveals a stabilizing role of spacers and two new repeat units.

Uciel Chorostecki, Ester Saus, Toni Gabaldón

The paper experimentally determines the secondary structure of NORAD, identifies spacers that stabilize its repeat units, and discovers two new repeat units.

15 citations

humanexperimental assay

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Molecular BiologyNucleic Acids ResearchPeer-reviewedOct 1, 2018

Efficiency and precision of miRNA biogenesis modes in plants

Belén Moro, Uciel Chorostecki, Siwaret Arikit…·Javier F. Palatnik

The paper investigates miRNA biogenesis modes in plants, showing that processing efficiency and precision vary with structural determinants and that DCL1 primarily uses a predominant structural region in wild-type plants.

61 citationstop 4%

plant (other)DNA methylation

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