Dimitri Guala

The FunCoup Cytoscape App integrates FunCoup network data with Cytoscape for multi-species gene interaction analysis and visualization.

FunCoup 6 enhances functional association networks with directed links, expanded coverage, and improved tools for analyzing protein interactions across species.

The paper benchmarks enrichment analysis methods using a disease pathway network and finds Network Enrichment Analysis methods perform best.

This study uses a variational autoencoder trained on healthy human RNA-seq data to predict disease gene expression changes and identify drug targets through latent space arithmetic.