Author

Rudi W. Hendriks

Erasmus MCORCID 0000-0003-2291-0382Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Immunology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Organism:human· 3 Assay:scRNA-seq· 3 Approach:statistical model· 3 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Maarten van den BergeiD· 2 shared Martijn C. NawijniD· 2 shared Martin BancheroiD· 2 shared Orestes A. CarpaijiD· 2 shared Anne Onrust-van SchoonhoveniD· 1 shared Aurore C. A. GayiD· 1 shared Djoke van Gosliga· 1 shared Esmee K. van der PloegiD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Maarten van den BergeORCID

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3 papers

Recent·Most cited

ImmunologyJournal of Allergy and Clinical ImmunologyPeer-reviewedJun 17, 2026

Common γ-chain cytokines induce an epigenomically plastic precursor-like KIT+ ILC2 state linked to immune disease susceptibility

Simone E. M. Olsthoorn, Anne Onrust-van Schoonhoven, Marjolein J. W. de Bruijn…·Ralph Stadhouders

This study identifies KIT+ ILC2s as an epigenomically plastic state linked to immune disease susceptibility and shows that STAT5 activation by cytokines induces this phenotype.

1 citation

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsBMC GenomicsPeer-reviewedNov 29, 2023

FastCAR: Fast Correction for Ambient RNA to facilitate differential gene expression analysis in single-cell RNA-sequencing datasets

Marijn Berg, Ilya Petoukhov, Inge van den Ende…·Martijn C. Nawijn

FastCAR corrects ambient RNA contamination in scRNA-Seq data, improving the accuracy of differential gene expression analysis by reducing false positives.

29 citations

humanscRNA-seq

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Molecular BiologybioRxivPreprintMar 16, 2023

Airway epithelial response to RSV is impaired in multiciliated and goblet cells in asthma

Aurore C. A. Gay, Martin Banchero, Orestes A. Carpaij…·Martijn C. Nawijn

This study examines the RSV response in bronchial epithelial cells from asthma patients and healthy donors, finding impaired antiviral responses in goblet and multiciliated cells in asthma.

2 citations

humanscRNA-seq

𝕏 PostBluesky