Author

Nicola Gökbuget

Goethe University FrankfurtORCID 0000-0003-2291-8245Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Research Focus:clustering· 1 Approach:deep learning· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Alina HartmanniD· 3 shared Claudia Dorothea BaldusiD· 3 shared Claudia HaferlachiD· 3 shared Lorenz BastianiD· 3 shared Malwine BarziD· 3 shared Monika BrüggemanniD· 3 shared Nadine WolgastiD· 3 shared Sonja BendigiD· 3 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersCancer Biology

Alina HartmannORCID

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3 papers

Recent·Most cited

BioinformaticsHemaSpherePeer-reviewedSep 1, 2026

The machine-learning classifier ALLCatchR2 identifies 20 T-ALL subtypes across cohorts and age groups

Thomas Beder, Nadine Wolgast, Wencke Walter…·Lorenz Bastian

The paper introduces ALLCatchR2, a machine learning classifier that identifies 20 T-ALL subtypes across multiple cohorts and age groups with high accuracy.

1 citationtop 3%

humanbulk RNA-seq

𝕏 PostBluesky

Cancer BiologyHemaSpherePeer-reviewedApr 1, 2026

IntegrateALL: an end-to-end RNA-seq analysis pipeline for multilevel data extraction and interpretable subtype classification in B-precursor ALL

Nadine Wolgast, Thomas Beder, Mayukh Mondal…·Lorenz Bastian

IntegrateALL is an RNA-seq pipeline that integrates expression-based subtyping, gene fusion detection, and virtual karyotyping to classify B-ALL with high accuracy.

1 citation

humanbulk RNA-seq

𝕏 PostBluesky

Cancer BiologyHemaSpherePeer-reviewedFeb 1, 2026

Intra-subtype heterogeneity shapes treatment response in KMT2A-rearranged ALL across all age groups

Alina Hartmann, Lorenz Bastian, Malwine Barz…·Claudia Dorothea Baldus

This study identifies how developmental maturity and fusion partner influence treatment response in KMT2A-rearranged B-ALL across all ages.

2 citations

humanbulk RNA-seq

𝕏 PostBluesky