Author

Zhi Yan

Rice UniversityORCID 0000-0003-2433-5553Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Zhi Yan1 paper · University of California, Berkeley

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:phylogenetics / evolution· 2 Approach:deep learning· 1 Approach:experimental assay· 1

Frequent Co-Authors

Luay K. NakhlehiD· 2 shared Mark Kessler· 2 shared Nicolae SapovaliD· 2 shared Ziyun GuangiD· 2 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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2 shared papersBioinformatics

Luay K. NakhlehORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 10, 2026

Reticulation-Aware Dissimilarities for Phylogenetic Networks

Ziyun Guang, Mark Kessler, Nicolae Sapoval…·Luay Nakhleh

This paper introduces a family of dissimilarity measures for phylogenetic networks that better capture reticulation differences than existing methods.

DOI 10.64898/2026.11.08.765198

deep learningphylogenetics / evolution

𝕏 PostBluesky

BioinformaticsbioRxivPreprintOct 18, 2026

DIMPLE: A Tree-Guided Divide-and-Conquer Framework for ILS-Aware Phylogenetic Network Inference on Large-Scale Data

Ziyun Guang, Nicolae Sapoval, Zhi Yan…·Luay K. Nakhleh

DIMPLE infers phylogenetic networks from large-scale data using a divide-and-conquer approach, achieving accurate merging and improved reticulation recovery over existing methods.

DOI 10.64898/2026.10.12.758494

experimental assayphylogenetics / evolution

𝕏 PostBluesky