Author

Kenny Pavan

Oregon Health & Science UniversityORCID 0000-0003-2442-7466Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Assay:long-read sequencing· 1 Organism:mouse· 1

Frequent Co-Authors

Arpiar B. SaundersiD· 2 shared Alexander A. NevueiD· 1 shared Emily Tiedemann· 1 shared Heike Boisvert· 1 shared Jessica HoughtoniD· 1 shared Jinjin Zhu· 1 shared Karl Young· 1 shared Lamya Ben AmeuriD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Arpiar B. SaundersORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintAug 28, 2026

Design and Assembly of Combinatorial DNA Barcodes for Probe-based Genomics Applications

Zach H. Goode, Emily Tiedemann, Lamya Ben Ameur…·Arpiar B. Saunders

The paper introduces a framework for designing and assembling combinatorial DNA barcodes for probe-based genomics, demonstrating their use in decoding complex RNA expression in mouse brains.

DOI 10.64898/2026.08.22.746475

mouselong-read sequencing

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BioinformaticsBioinformatics AdvancesPeer-reviewedDec 26, 2024

AnnSQL: A Python SQL-based package for fast large-scale single-cell genomics analysis using minimal computational resources

Kenny Pavan, Arpiar B. Saunders

AnnSQL provides a fast, resource-efficient SQL-based tool for analyzing large single-cell RNA-seq datasets, achieving significant speed improvements over traditional methods.

1 citation

scRNA-seqstatistical model

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