Author

Dongbo Hu

University of PennsylvaniaORCID 0000-0003-2606-3969Unclaimed ORCID profile · follow to get notified of new preprints

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Dongbo Hu1 paper · University of Pennsylvania

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Assay:bulk RNA-seq· 2 Approach:deep learning· 2 Research Focus:differential expression· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Organism:human· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Casey S. GreeneiD· 2 shared Deborah A. HoganiD· 2 shared Alexandra J. LeeiD· 1 shared Dallas L. MouldiD· 1 shared Georgia DoingiD· 1 shared Jake CrawfordiD· 1 shared James C. CostelloiD· 1 shared Jie TaniD· 1 shared

Activity by Year

2017-2021 · peak 1/yr

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10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Casey S. GreeneORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 24, 2021

Generative neural networks separate common and specific transcriptional responses

Alexandra J. Lee, Dallas L. Mould, Jake Crawford…·Casey S. Greene

This paper introduces SOPHIE, a method using generative neural networks to distinguish common from specific transcriptional responses across datasets.

1 citation

humanbacteria (other)

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedNov 22, 2017

ADAGE signature analysis: differential expression analysis with data-defined gene sets

Jie Tan, Matthew Huyck, Dongbo Hu…·Casey S. Greene

ADAGE signature analysis identifies perturbed biological processes by learning gene signatures from public data, outperforming curated gene sets in revealing novel processes in Pseudomonas aeruginosa.

23 citations

bacteria (other)bulk RNA-seq

𝕏 PostBluesky