Raquel S. Linheiro

This study sequences the giant Y chromosome of Silene latifolia and reveals its structure, function, and evolutionary history.

The paper introduces TVscript, a tool to filter out transcripts with high intra-condition variation, improving differential expression analysis in multi-species RNA-seq data.

CView enhances sequence alignment visualization by incorporating a dynamic network to represent sequence diversity, enabling better insight into alignment structure and relationships.

McClintock is a pipeline that integrates multiple TE detection methods to evaluate their performance on simulated and real yeast genomes, showing that combining methods improves detection of non-reference TEs.