Trine B. Rounge

The paper constructs a large-scale resource of bacteria-MGE interactions in the human gut microbiome using CRISPR-Cas cassettes and links them to diet and lifestyle factors.

This study examines how chlorine-based antiseptic use affects the hand microbiome during a military exercise, finding greater post-treatment microbiome differences with the antiseptic compared to alcohol-based alternatives.

This study examines how a military field exercise affects the bacterial communities on soldiers' hands and forearms, finding site-specific changes in diversity and composition.

VirMake processes shotgun metagenomic data to identify and characterize viral taxa and functions, showing variability in viral genome richness and taxonomy across environments and protocols.

GENOMICON-Seq simulates mutations in amplicon and whole exome sequencing to evaluate bioinformatics tools and experimental designs.

HoCoRT removes host contamination from shotgun metagenome sequencing data using multiple methods, finding optimal combinations for accuracy and speed.

The paper introduces MirMachine, a tool that uses trained covariance models to annotate microRNA complements in genomes, enabling annotation of large and extinct genomes and assessing genome assembly completeness.

The paper analyzes APOBEC3-induced mutations and integration patterns in HPV16 and HPV18 cervical samples across different disease stages to identify genomic factors associated with cancer progression.

The paper identifies associations between common traits and circulating ncRNA expression, highlighting the need to adjust for age, sex, and other factors in ncRNA biomarker analyses.

The paper profiles circulating RNAs in human serum using RNA-seq and identifies potential biomarkers by analyzing biological and technical variation.