Hélène Bret

The paper develops a transformer model to predict codon sequences from amino acids, improving rare codon prediction and linking sequence variation to protein function.

The paper demonstrates that AlphaFold2-Multimer can identify interaction sites in intrinsically disordered regions with improved accuracy using fragment-based approaches and evolutionary information integration.

This paper introduces CARNAGE, a graph neural network that embeds RNA structure into sequence-like representations, enabling structural-aware sequence analysis without explicit alignment.