Author

Yuanyuan Li

National Institute of Environmental Health SciencesORCID 0000-0003-2979-3326Unclaimed ORCID profile · follow to get notified of new preprints

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Yuanyuan Li5 papers · China Agricultural University

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:deconvolution· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Organism:human· 1 Research Focus:software / tool· 1

Frequent Co-Authors

David M. UmbachiD· 2 shared Kai KangiD· 2 shared Leping LiiD· 2 shared Caizhi David HuangiD· 1 shared Igor ShatsiD· 1 shared Melissa LiiD· 1 shared Qian MengiD· 1 shared Xiaoling LiiD· 1 shared

Activity by Year

2018-2021 · peak 1/yr

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8 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

David M. UmbachORCID

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2 papers

Recent·Most cited

BioinformaticsBMC BioinformaticsPeer-reviewedMay 24, 2021

CDSeqR: fast complete deconvolution for gene expression data from bulk tissues

Kai Kang, Caizhi David Huang, Yuanyuan Li…·Leping Li

CDSeqR improves computational efficiency of CDSeq for bulk RNA-seq deconvolution and adds a function for cell type annotation using scRNA-seq data.

27 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintDec 14, 2018

A novel computational complete deconvolution method using RNA-seq data

Kai Kang, Qian Meng, Igor Shats…·Leping Li

This paper introduces CDSeq, a computational method that estimates both cell type proportions and gene expression profiles from bulk RNA-seq data, outperforming existing methods in accuracy.

5 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky