Author

Damien Farrell

University College DublinORCID 0000-0003-3020-7945Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Assay:proteomics· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Kerri M. MaloneiD· 1 shared Olga T. SchubertiD· 1 shared Ruedi H. AebersoldiD· 1 shared Stephen Vincent GordoniD· 1 shared Suelee Robbe‐AustermaniD· 1 shared Tod P. StuberiD· 1 shared

Activity by Year

2017-2021 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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1 shared paperGenomics

Kerri M. MaloneORCID

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3 papers

Recent·Most cited

BioinformaticsGigabytePeer-reviewedFeb 24, 2021

epitopepredict: A tool for integrated MHC binding prediction

epitopepredict is a tool that integrates multiple MHC binding prediction algorithms to identify potential T cell epitopes from whole genomes.

4 citations

proteomicsstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 10, 2017

smallrnaseq: Short Non Coding RNA-Seq Analysis With Python

smallrnaseq provides a Python tool for analyzing small non-coding RNA-seq data, including miRNA quantification and novel miRNA prediction.

5 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky

GenomicsGenome AnnouncementsPeer-reviewedApr 6, 2017

Updated reference genome sequence and annotation of Mycobacterium bovis AF2122/97

Kerri M. Malone, Damien Farrell, Tod P. Stuber…·Stephen Vincent Gordon

The paper updates the reference genome of Mycobacterium bovis AF2122/97 with new annotations, corrected SNPs, and confirms the presence of the RD900 locus.

48 citationstop 4%

bacteria (other)whole-genome sequencing

𝕏 PostBluesky