Stephen Vincent Gordon

The paper identifies cis-eQTL and reQTL in TB patients during treatment using RNA-seq data and variant imputation, showing changes in cell type proportions and gene expression.

This study uses multi-omics approaches to analyze how M. bovis infection reprograms the epigenome of bovine alveolar macrophages, identifying key genes and pathways involved in the host response.

The paper develops mRNA-based classifiers using RNA-seq and machine learning to accurately distinguish bTB-positive from bTB-negative cattle and other pathogens.

This study integrates transcriptomic, genomic, and GWAS data to identify genes and eQTLs associated with the PB transcriptome response to M. bovis infection in cattle.

This study integrates multi-omics data from bovine and human macrophages infected with M. bovis and M. tuberculosis to identify genes and pathways associated with resistance to mycobacterial infection.

The paper identifies a 170-gene transcriptional signature in bovine peripheral blood post-M. bovis infection following PPD-b stimulation, suggesting potential biomarkers for bTB diagnostics.

The paper integrates multi-omics data with genome-wide association results to identify infection response pathways and genomic variants associated with resistance to bovine tuberculosis.

The paper analyzes transcriptome data to uncover the transcriptional regulation of genes involved in phenolphtiocerol and phenolglycolipid production in mycobacteria.

The paper identifies transcriptional and chromatin changes in bovine alveolar macrophages during Mycobacterium bovis infection and links them to genetic variants associated with tuberculosis resistance.

This study examines the DNA methylome of bovine alveolar macrophages infected with Mycobacterium bovis and finds no significant changes in DNA methylation, but identifies genes with intermediate promoter methylation enriched for immune-related functions.

The paper assesses globin mRNA impact on RNA-seq in horses and cattle, finding low levels that eliminate the need for globin depletion.

This study compares the transcriptomic and proteomic profiles of Mycobacterium tuberculosis and Mycobacterium bovis, revealing distinct host responses in bovine macrophages.

The paper updates the reference genome of Mycobacterium bovis AF2122/97 with new annotations, corrected SNPs, and confirms the presence of the RD900 locus.