Author

Allison R. Pine

Memorial Sloan Kettering Cancer CenterORCID 0000-0003-3125-9608Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:scATAC-seq· 2 Assay:ATAC-seq· 1 Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Approach:deep learning· 1

Frequent Co-Authors

Christina S. LeslieiD· 2 shared Alexander Yu RudenskyiD· 1 shared Dana Pe’eriD· 1 shared Joris van der VeekeniD· 1 shared Linas MažutisiD· 1 shared Merve ŞahiniD· 1 shared Yi ZhongiD· 1 shared Yuri PritykiniD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Christina S. LeslieORCID

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2 papers

Recent·Most cited

BioinformaticsNature MethodsPeer-reviewedMay 9, 2024

Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace

Zakieh Tayyebi, Allison R. Pine, Christina S. Leslie

CellSpace provides a scalable sequence-informed embedding for scATAC-seq data, capturing cell subpopulations and transcription factor activity while mitigating batch effects.

18 citations

humanmouse

𝕏 PostBluesky

GenomicsMolecular CellPeer-reviewedApr 22, 2021

A unified atlas of CD8 T cell dysfunctional states in cancer and infection

Yuri Pritykin, Joris van der Veeken, Allison R. Pine…·Christina S. Leslie

The paper defines a shared differentiation trajectory of CD8 T cell dysfunction across cancer and infection using ATAC-seq and RNA-seq data from multiple studies.

120 citationstop 2%

humanscATAC-seq

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