Author

Mindia Haryono

National University of SingaporeORCID 0000-0003-3248-425XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:metagenomics· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Organism:fungi (other)· 1

Frequent Co-Authors

Krithika ArumugamiD· 3 shared Rohan B. H. WilliamsiD· 3 shared Stefan WuertziD· 3 shared Daniela I. Drautz‐MosesiD· 2 shared Irina N. BessarabiD· 2 shared Yingyu LawiD· 2 shared Alexandra J. WeisbergiD· 1 shared Chih‐Feng WuiD· 1 shared

Activity by Year

2020-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersGenomics

Krithika ArumugamORCID

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4 papers

Recent·Most cited

GenomicsbioRxivPreprintNov 26, 2022

A draft genome of the ascomycotal fungal species Pseudopithomyces maydicus (family Didymosphaeriaceae)

Krithika Arumugam, Sherilyn Ho, Irina N. Bessarab…·Rohan B. H. Williams

The paper presents a draft genome of Pseudopithomyces maydicus, identifying gene models and biosynthetic gene clusters.

1 citation

fungi (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsFrontiers in MicrobiologyPeer-reviewedJun 10, 2022

Recovery of high quality metagenome-assembled genomes from full-scale activated sludge microbial communities in a tropical climate using longitudinal metagenome sampling

Mindia Haryono, Yingyu Law, Krithika Arumugam…·Rohan B. H. Williams

The paper evaluates MAG recovery strategies from activated sludge microbial communities, finding that co-assembly outperforms single-sample assembly and only 58 MAGs meet quality criteria.

24 citations

metagenomicsstatistical model

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GenomicsBMC BiologyPeer-reviewedJan 12, 2022

Modular evolution of secretion systems and virulence plasmids in a bacterial species complex

Lin Chou, Yu-Chen Lin, Mindia Haryono…·Chih‐Horng Kuo

The paper analyzes genome diversity in Agrobacterium tumefaciens to study the evolution of secretion systems and virulence plasmids, revealing gene losses, horizontal transfers, and modularity in molecular evolution.

27 citations

bacteria (other)whole-genome sequencing

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BioinformaticsbioRxivPreprintMar 12, 2020

Analysis procedures for assessing recovery of high quality, complete, closed genomes from Nanopore long read metagenome sequencing

Krithika Arumugam, Irina N. Bessarab, Mindia Haryono…·Rohan B. H. Williams

The paper describes methods to validate long read assembled genomes using short read metagenome assembled genomes and assesses correction procedures' impact on genome quality, contributing new closed genomes from wastewater bioprocesses.

7 citations

long-read sequencingmetagenomics

𝕏 PostBluesky