Author

Áine Halpin

Trinity College DublinORCID 0000-0003-3298-1563Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Daniel G. BradleyiD· 2 shared Jolijn A. M. ErveniD· 2 shared Kevin G. DalyiD· 2 shared Valeria MattiangeliiD· 2 shared Adeline VautriniD· 1 shared Alexey KalmykoviD· 1 shared Alisher BegmatoviD· 1 shared Alisher SandiboeviD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Daniel G. BradleyORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintSep 6, 2026

PIGSTI: a modular, reproducible pipeline for detecting species identity, pathogens, and microbes from animal palaeogenomic data

Louis L’Hôte, Catherine Butt, Áine Halpin…·Kevin G. Daly

PIGSTI detects species identity, pathogens, and microbes in ancient animal genomic data, identifying 15 zoonotic pathogens including Rickettsia felis and Leptospira borgpetersenii.

DOI 10.64898/2026.09.01.748539

whole-genome sequencingstatistical model

𝕏 PostBluesky

GenomicsbioRxivPreprintJul 23, 2026

Mediterranean dispersal imposed bottlenecks in Neolithic sheep and goats

Áine Halpin, Jolijn A. M. Erven, Roger Alcàntra…·Kevin G. Daly

The paper analyzes palaeogenomes of Neolithic sheep and goats to show that Mediterranean dispersal caused genetic bottlenecks, reducing effective population sizes and increasing homozygosity in Iberian livestock.

DOI 10.64898/2026.07.21.739115

whole-genome sequencingstatistical model

𝕏 PostBluesky