Author

Jonathan Marquez

Yale UniversityORCID 0000-0003-3377-7599Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Amrei M. MandeliD· 1 shared David R. BeieriD· 1 shared Eileen Uribe‐QueroliD· 1 shared Elizabeth Dong NguyeniD· 1 shared Faiza AslamiD· 1 shared Grace Huang· 1 shared Maneeshi S. PrasadiD· 1 shared Martín I. García‐CastroiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperDevelopmental Biology

Amrei M. MandelORCID

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3 papers

Recent·Most cited

Developmental BiologybioRxivPreprintJun 25, 2026

Single-nucleus Transcriptomics Reveals Precystic Dysfunction in Polycystic Kidney Disease

Jonathan Marquez, Oleksandra Tymchyshyna, Sean K. Gombart…·David R. Beier

The paper uses single-nucleus transcriptomics to study precystic kidney dysfunction in PKD, identifying a signaling pathway and gene (Creb5) involved in early cystogenesis.

DOI 10.64898/2026.06.23.730438

mousescRNA-seq

𝕏 PostBluesky

Developmental BiologygenesisPeer-reviewedJun 15, 2023

Expanding EMC Foldopathies: Topogenesis Deficits Alter the Neural Crest

Jonathan Marquez, Faiza Aslam, Mustafa Kezar Khokha

The paper investigates the role of EMC9 and EMC10 in neural crest development using Xenopus models, finding similar phenotypes to EMC1 loss of function in craniofacial development.

3 citations

experimental assay

𝕏 PostBluesky

Developmental BiologyDevelopmental BiologyPeer-reviewedOct 11, 2019

Blastula stage specification of avian neural crest

Maneeshi S. Prasad, Eileen Uribe‐Querol, Jonathan Marquez…·Martín I. García‐Castro

The paper identifies an intermediate region in blastula stage chick embryos that specifies towards the neural crest cell fate, independent of contact-mediated induction.

21 citations

experimental assaycell type annotation

𝕏 PostBluesky