Cheng-Hung Tsai

orthoSynAssign refines orthogroups using synteny information, improving precision and scalability for phylogenomic analyses.

Phyling is a tool for phylogenetic inference from protein sequences, offering faster performance than OrthoFinder with comparable accuracy.

This study examines genomic changes in mating-type loci across Rhodotorula yeast species, revealing structural divergence and inheritance patterns associated with shifts in reproductive strategies.

The paper uses deep learning to predict splicing patterns from promoter-bound transcription factor binding sites in human tissues.

The paper identifies and compares long non-coding RNAs in fire ant queens across two reproductive states, finding differentially expressed lncRNAs associated with gene regulation during reproductive transitions.