Thin Nguyen

TACO detects presymptomatic Long COVID by combining causal inference with a foundation model, achieving higher precision with fewer features and no hyperparameter tuning.

This paper reviews computational methods and datasets for understanding Long COVID's mechanisms and developing diagnostic and therapeutic strategies using multi-omics data.

This paper identifies 32 causal genes for Long COVID using a multi-omics framework combining TWMR and CT, revealing novel genetic factors and symptom subtypes.

This paper introduces PAN, a method to create sample-specific gene networks using annotations, improving breast cancer relapse prediction compared to existing methods.

pDriver identifies personalized coding and miRNA cancer drivers for individual patients using gene networks and outperforms existing methods on TCGA datasets.

This paper introduces GraphDRP, a graph convolutional network for drug response prediction, showing improved performance and interpretability through molecular graph representation.

Representing drugs as molecular graphs, GraphDTA lowers drug-target affinity prediction error to MSE 0.229 on Davis and 0.139 on Kiba versus deep learning baselines.

The paper predicts cellular positions in the Drosophila embryo using scRNA-seq data by benchmarking methods against spatially annotated genes.

The paper presents methods and tools for predicting cell locations in Drosophila embryos using single-cell transcriptomic data, achieving top results in two sub-challenges.

This paper introduces an anomaly detection approach to classify cancer using only healthy tissue transcriptomes, showing improved accuracy with more normal samples.

This paper improves neuropsychiatric condition classification by using gene ontology terms as features, enhancing performance, stability, and interpretability of classifiers.

This study identifies sex-dependent and -independent biomarkers in ASD using post-mortem brain RNA-Seq and blood microarray data, highlighting sex-specific gene expression differences and pathway dysregulation.