Author

Shiqi Tu

Chinese Academy of SciencesORCID 0000-0003-3534-5714Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 3 Assay:ATAC-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Haojie CheniD· 3 shared Zhen ShaoiD· 3 shared Yijing ZhangiD· 2 shared Anqin Zheng· 1 shared Chongze YuaniD· 1 shared David J. WaxmaniD· 1 shared Feng TianiD· 1 shared Fengxiang Tan· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersBioinformatics

Haojie ChenORCID

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3 papers

Recent·Most cited

BioinformaticsComputational and Structural Biotechnology JournalPeer-reviewedJan 1, 2025

EAP: a versatile cloud-based platform for comprehensive and interactive analysis of large-scale ChIP/ATAC-seq data sets

Guangyong Zheng, Haojie Chen, Zhijie Guo…·Zhen Shao

EAP provides a cloud-based platform for analyzing large-scale ChIP/ATAC-seq data, generating publication-ready results and enabling epigenomic analysis in cancer and therapeutic target discovery.

1 citation

ChIP-seqATAC-seq

𝕏 PostBluesky

BioinformaticsGenome biologyPeer-reviewedFeb 28, 2022

HyperChIP for identifying hypervariable signals across ChIP/ATAC-seq samples

Haojie Chen, Shiqi Tu, Chongze Yuan…·Zhen Shao

HyperChIP identifies hypervariable genomic regions across ChIP/ATAC-seq samples to reveal tumor heterogeneity and associated transcription factors.

6 citations

humanChIP-seq

𝕏 PostBluesky

BioinformaticsGenome ResearchPeer-reviewedJan 1, 2021

MAnorm2 for quantitatively comparing groups of ChIP-seq samples

Shiqi Tu, Mushan Li, Fengxiang Tan…·Zhen Shao

MAnorm2 is a tool for comparing ChIP-seq samples across groups, improving differential binding detection by accounting for within-group variability and outperforming existing methods.

67 citations

ChIP-seqstatistical model

𝕏 PostBluesky