Author

run Qi

Utrecht UniversityORCID 0000-0003-3554-6575Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Organism:Arabidopsis· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:Ribo-seq· 1

Frequent Co-Authors

Bing BaiiD· 1 shared Corne MJ Pieterse· 1 shared Francel W. A. VerstappeniD· 1 shared Harm NijveeniD· 1 shared Iris F. KappersiD· 1 shared Ivona Glavincheska· 1 shared Jelle SpooreniD· 1 shared Leónie BentsinkiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperPlant Biology

Bing BaiORCID

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2 papers

Recent·Most cited

Plant BiologybioRxivPreprintOct 23, 2026

Root gene regulatory network analysis reveals roles for defense hormones and secondary metabolites in establishment of disease-suppressive soil

run Qi, Ivona Glavincheska, Jelle Spooren…·Saskia C. M. Van Wees

The paper analyzes root gene regulatory networks in Arabidopsis thaliana to identify roles of defense hormones and secondary metabolites in disease-suppressive soil establishment.

DOI 10.64898/2026.10.22.760950

Arabidopsisbulk RNA-seq

Plant BiologybioRxivPreprintJun 24, 2025

Translational landscape during Seed Germination at Sub-Codon resolution

Bing Bai, run Qi, Wei Song…·Leónie Bentsink

This study uses ribosome profiling to analyze translational regulation during Arabidopsis seed germination, identifying codon usage patterns and uORFs involved in translational control.

1 citation

ArabidopsisRibo-seq