Author

Kosuke Tomimatsu

Kyushu UniversityORCID 0000-0003-3733-6686Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Yasuyuki OhkawaiD· 2 shared Akihito HaradaiD· 1 shared Hiroshi KimurâiD· 1 shared Hiroshi OchiaiiD· 1 shared Hitoshi KurumizakaiD· 1 shared Kaori Y. TanakaiD· 1 shared Kazumitsu MaeharaiD· 1 shared Masao NagasakiiD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Yasuyuki OhkawaORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 4, 2024

MEGA-FISH: Multi-omics Extensible GPU-Accelerated FISH Processing Framework for Huge-Scale Spatial Omics

Yuma Ito, Kosuke Tomimatsu, Masao Nagasaki…·Yasuyuki Ohkawa

MEGA-FISH is a GPU-accelerated framework for spatial omics image analysis that improves processing speed and accuracy for large-scale tissue data.

1 citation

spatial transcriptomicsexperimental assay

𝕏 PostBluesky

Molecular BiologyMolecular Systems BiologyPeer-reviewedNov 1, 2021

Modeling population size independent tissue epigenomes by ChIL-seq with single-thin sections

Kazumitsu Maehara, Kosuke Tomimatsu, Akihito Harada…·Yasuyuki Ohkawa

The paper introduces tsChIL, a method to analyze tissue-level epigenomic data from single-thin sections, enabling independent evaluation of cell population changes and gene activation in regenerating skeletal muscle.

7 citations

𝕏 PostBluesky