Author

Jieming Chen

GenentechORCID 0000-0003-3767-9486Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetic & Genomic Medicine· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Christian HammeriD· 2 shared Suchit JhunjhunwalaiD· 2 shared David D.L. BowtelliD· 1 shared Deepti R. NagarkariD· 1 shared Diana ChangiD· 1 shared Edward Ernest KadeliD· 1 shared Fritz Joachim SedlazeckiD· 1 shared George Au‐YeungiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersGenetic & Genomic Medicine

Christian HammerORCID

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3 papers

Recent·Most cited

Genetic & Genomic MedicinemedRxivPreprintMar 25, 2026

Comprehensive detection of genetic and epigenetic alterations in cancer using long reads with TumorLens

Luis F. Paulin, Minyi Shi, Yilei Fu…·Fritz Joachim Sedlazeck

TumorLens detects genetic and epigenetic alterations in cancer using long reads, revealing key somatic events and methylation patterns across tumor samples.

3 citations

humanwhole-genome sequencing

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ImmunologybioRxivPreprintOct 14, 2024

Pep2Vec: An Interpretable Model for Peptide-MHC Presentation Prediction and Contaminant Identification in Ligandome Datasets

William John Thrift, Quade Broadwell, Jason F. Perera…·Suchit Jhunjhunwala

1 citation

proteomicsdeep learning

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BioinformaticsBriefings in BioinformaticsPeer-reviewedAug 20, 2020

In silico tools for accurate HLA and KIR inference from clinical sequencing data empower immunogenetics on individual-patient and population scales

Jieming Chen, Shravan Madireddi, Deepti R. Nagarkar…·Christian Hammer

The paper evaluates computational tools for accurately inferring HLA alleles and KIR haplotypes from whole-genome or whole-exome sequencing data, showing high accuracy for both tasks.

31 citations

humanwhole-genome sequencing

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