Author

Andrea L. Harper

University of YorkORCID 0000-0003-3859-1152Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:chromatin & epigenetic regulation· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Sally R. JamesiD· 2 shared Sara Franco OrtegaiD· 2 shared David BoshieriD· 1 shared Harry Stevens· 1 shared Isaac J. ReynoldsiD· 1 shared James A BedfordiD· 1 shared Jason Daff· 1 shared Jo Clark· 1 shared

Activity by Year

2025-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersPlant Biology

Sally R. JamesORCID

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3 papers

Recent·Most cited

Plant BiologybioRxivPreprintDec 5, 2025

DNA methylation mediates transcriptional stability and transposon-driven trans-regulation under drought in wheat

Isaac J. Reynolds, Liam J. Barratt, Andrea L. Harper

This study investigates how DNA methylation affects transcriptional stability and trans-regulation of stress-responsive genes in wheat under drought conditions.

1 citation

plant (other)DNA methylation

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Plant BiologyG3 Genes Genomes GeneticsPeer-reviewedMar 20, 2025

Fraxinus excelsior updated long-read genome reveals the importance of MADS-box genes in tolerance mechanisms against ash dieback

Sara Franco Ortega, James A Bedford, Sally R. James…·Andrea L. Harper

The paper updates the Fraxinus excelsior genome and identifies MADS-box gene expression markers and DNA methylation differences associated with ash dieback tolerance.

5 citations

humanwhole-genome sequencing

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Plant BiologybioRxivPreprintFeb 12, 2025

Assembly and annotation of Solanum dulcamara and Solanum nigrum plant genomes, two nightshades with different susceptibilities to Ralstonia solanacearum

Sara Franco Ortega, Sally R. James, Lesley Gilbert…·Andrea L. Harper

The paper assembles and annotates the genomes of two nightshade plants, S. dulcamara and S. nigrum, to identify genetic differences associated with resistance and susceptibility to Ralstonia solanacearum.

DOI 10.1101/2025.02.12.637948

plant (other)whole-genome sequencing

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