Sally R. James

This study shows CIZ1 modulates sex-specific lymphoid lineage differentiation by affecting X-chromosome inactivation and autosomal gene expression in males and females.

The paper uses multimodal imaging and single-cell transcriptomics to identify LPCAT2-mediated membrane remodeling in granuloma macrophages during visceral leishmaniasis.

This study identifies OLADOs, a new class of eukaryotic decarboxylases involved in alkaloid biosynthesis, showing their parallel evolution from bacterial-like enzymes.

This study maps parasite dissemination patterns in visceral leishmaniasis using a barcoded library and ecological analysis, revealing bi-directional highways and super-seeder tissues.

The paper identifies an ERα-dependent hypoxia response in ER+ breast cancer that influences gene expression and sensitivity to amiloride, linking hypoxia and ER signaling.

The paper updates the Fraxinus excelsior genome and identifies MADS-box gene expression markers and DNA methylation differences associated with ash dieback tolerance.

The paper assembles and annotates the genomes of two nightshade plants, S. dulcamara and S. nigrum, to identify genetic differences associated with resistance and susceptibility to Ralstonia solanacearum.

This study identifies daily and 16-hour gene expression rhythms in C. elegans using RNA-seq, revealing both circadian and novel oscillatory patterns.

The paper presents genome assemblies for two Nepetoideae species and provides a species tree using genome-derived gene models.

The paper reports the genome of Parascedosporium putredinis NO1, revealing expanded oxidative enzyme repertoires and identifying new lignocellulose-degrading enzymes through structure-based methods.

This study resolves the complex phylogenetic relationships within Galdieria by analyzing genome-scale data from multiple strains, revealing divergent lineages and incongruent interlineage relationships across organellar and nuclear genomes.

The paper compares whole-genome sequences of three Galdieria sulphuraria strains, revealing structural rearrangements and a high number of nuclear chromosomes associated with adaptability in extreme environments.