An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps
Prashant S. Hosmani, Mirella Flores-Gonzalez, Henri van de Geest, Florian Maumus, Linda V. Bakker, Elio G. W. M. Schijlen, Jan C. van Haarst, Jan H. G. Cordewener, Gabino F. Sanchez‐Perez, Sander Peters, Zhangjun Fei, James J. Giovannoni, Lukas A. Mueller, Surya Saha
A PacBio and Hi-C tomato genome rebuild shrinks gaps from 81.71Mb to 44Kb; the matching ITAG4.0 annotation adds 4,794 genes and updates most carried-over models.
bioRxiv · Sep 14, 2019 · PreprintGenomics✦ In-depth digest