Author

Philip James Shaw

Thailand Science ParkORCID 0000-0003-3913-3057Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Assay:DNA methylation· 1 Assay:GWAS summary statistics· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Anavaj SakuntabhaiiD· 2 shared Fentaw AbegaziD· 2 shared Kridsadakorn ChaichoompuiD· 2 shared Kristel Van SteeniD· 2 shared Sissades TongsimaiD· 2 shared Bruno CavadasiD· 1 shared Luísa Calais PereiraiD· 1 shared Luı́sa PereiraiD· 1 shared

Activity by Year

2017-2019 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 26 mutual co-author links

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2 shared papersBioinformatics

Anavaj SakuntabhaiORCID

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2 papers

Recent·Most cited

BioinformaticsSource Code for Biology and MedicinePeer-reviewedMar 20, 2019

IPCAPS: an R package for iterative pruning to capture population structure

Kridsadakorn Chaichoompu, Fentaw Abegaz, Sissades Tongsima…·Kristel Van Steen

IPCAPS is an R package that uses iterative pruning PCA to resolve fine-scale population structure from SNP data, improving subpopulation detection and reducing misclassification.

16 citations

DNA methylationwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintDec 15, 2017

A methodology for unsupervised clustering using iterative pruning to capture fine-scale structure

Kridsadakorn Chaichoompu, Fentaw Abegaz, Sissades Tongsima…·Kristel Van Steen

The paper introduces IPCAPS, an unsupervised clustering method using iterative pruning to detect fine-scale population structure from SNP data, showing improved accuracy over existing tools in simulations.

2 citations

GWAS summary statisticsstatistical model

𝕏 PostBluesky