Author

Natsu Nakajima

Institute for Quantitative Biosciences, The University of TokyoORCID 0000-0003-3940-008XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Katsuhiko ShirahigeiD· 2 shared Ryuichiro NakatoiD· 2 shared Akashi Izumi-Taguchi· 1 shared Asuka Kamio· 1 shared Atsushi Iguchi· 1 shared Genta NagaeiD· 1 shared Haruki KumeiD· 1 shared Hiromi WadaiD· 1 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Katsuhiko ShirahigeORCID

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2 papers

Recent·Most cited

BioinformaticsNucleic Acids ResearchPeer-reviewedJul 4, 2021

Codependency and mutual exclusivity for gene community detection from sparse single-cell transcriptome data

Natsu Nakajima, Tomoatsu Hayashi, Katsunori Fujiki…·Ryuichiro Nakato

The paper introduces a method to detect gene communities and identify mutually exclusive gene pairs from sparse scRNA-seq data, showing improved sensitivity in capturing cellular heterogeneity.

10 citations

humanscRNA-seq

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GenomicsEpigenetics & ChromatinPeer-reviewedDec 1, 2019

Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells

Ryuichiro Nakato, Youichiro Wada, Ryo Nakaki…·Katsuhiko Shirahige

The paper characterizes the transcriptomic and epigenomic landscape of nine human endothelial cell types, identifying EC-specific enhancers and marker genes, and highlights the role of HOX genes in vascular development and disease.

38 citations

humanbulk RNA-seq

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