Lukasz M. Szydlowski

The paper introduces metagenomic-deepFRI, a framework that integrates protein structure models into functional annotation pipelines, improving GO term prediction confidence and coverage in metagenomic datasets.

The paper functionally annotates genomes of ISS-isolated bacteria and identifies adaptations to space conditions through comparative genomics and proteome analysis.

This work analyzes protein structure databases to reveal functional clustering and creates a unified low-dimensional representation for exploring sequence-structure-function relationships.

The paper tracks microbial community changes in bioelectrochemical systems over 12 weeks, showing how certain genera like Geobacter dominate and adapt to electrode potentials.