Author

Federico Gossi

ETH ZurichORCID 0000-0003-4114-5479Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:contrastive learning· 1 Research Focus:dimensionality reduction· 1 Assay:Hi-C· 1 Approach:machine learning (classical)· 1 Approach:optimal transport· 1 Assay:scATAC-seq· 1 Assay:scRNA-seq· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Adriano Luca MartinelliiD· 2 shared Marianna RapsomanikiiD· 2 shared Pushpak PatiiD· 2 shared Henry Valeyre· 1 shared Vignesh Ram SomnathiD· 1 shared

Activity by Year

2022-2022 · peak 2/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Adriano Luca MartinelliORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 16, 2022

MatchCLOT: Single-Cell Modality Matching with Contrastive Learning and Optimal Transport

Federico Gossi, Pushpak Pati, Adriano Luca Martinelli, Marianna Rapsomaniki

MatchCLOT improves modality matching in single-cell data by combining contrastive learning and optimal transport, achieving state-of-the-art results on a benchmark challenge.

2 citations

scRNA-seqscATAC-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 15, 2022

ChromFormer: A transformer-based model for 3Dgenome structure prediction

Henry Valeyre, Pushpak Pati, Federico Gossi…·Marianna Rapsomaniki

ChromFormer predicts 3D chromatin structures from Hi-C data using a transformer-based model, outperforming existing methods on synthetic data and matching results on experimental data.

2 citations

Hi-Ctransformer / foundation model

𝕏 PostBluesky