Author

Selina Jansky

German Cancer Research CenterORCID 0000-0003-4227-0298Unclaimed ORCID profile · follow to get notified of new preprints

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:deconvolution· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Diego di BernardoiD· 1 shared Elad ChomskyiD· 1 shared Evgeny KineriD· 1 shared Francisco Avila CobosiD· 1 shared Frank WestermanniD· 1 shared Hua‐Sheng ChiuiD· 1 shared Jan J. MolenaariD· 1 shared Jessica L. EppsiD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperSystems Biology

Diego di BernardoORCID

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1 paper

Recent·Most cited

Systems BiologyGenome biologyPeer-reviewedAug 1, 2023

Effective methods for bulk RNA-Seq deconvolution using scnRNA-Seq transcriptomes

Francisco Avila Cobos, Mohammad Javad Najaf Panah, Jessica L. Epps…·Pavel Sumazin

The paper evaluates deconvolution methods for bulk RNA-Seq using scnRNA-Seq data, identifies biases, and introduces SQUID, a method that outperforms others in predicting cell mixtures and identifying cancer subclones.

64 citationstop 2%

humanbulk RNA-seq

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