Author

Matthew R. Cooperberg

San Francisco VA Medical CenterORCID 0000-0003-4339-6685Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Franklin W. HuangiD· 2 shared Hanbing SongiD· 2 shared Arda Demirci· 1 shared Bobak Seddighzadeh· 1 shared Brendan Lapointe RaizenneiD· 1 shared Christopher M. HeaphyiD· 1 shared Ezequiel Goldschmidt· 1 shared Hannah N. W. WeinsteiniD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersGenomics

Franklin W. HuangORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintMar 27, 2026

A single-cell and spatial atlas of prostate cancer reveals the combinatorial nature of gene modules underlying lineage plasticity and metastasis

Hanbing Song, Junxiang Xu, Keila Velázquez-Arcelay…·Franklin W. Huang

The paper constructs a single-cell and spatial atlas of prostate cancer to reveal gene modules driving lineage plasticity and metastasis, identifying new biological insights and a transformer-based model for cell-state classification.

3 citations

humanscRNA-seq

𝕏 PostBluesky

GenomicsEuropean UrologyPeer-reviewedMay 5, 2020

Expression of ACE2, the SARS-CoV-2 receptor, and TMPRSS2 in prostate epithelial cells

Hanbing Song, Bobak Seddighzadeh, Matthew R. Cooperberg, Franklin W. Huang

The paper examines sex differences in ACE2 and TMPRSS2 expression in prostate and lung epithelial cells, finding higher ACE2 expression in male lung type II pneumocytes and co-expression in prostate club cells.

137 citationstop 4%

humanscRNA-seq

𝕏 PostBluesky