Author

Jason Keith Sicklick

University of California San DiegoORCID 0000-0003-4403-0271Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Alexander T. WenzeliD· 2 shared Ashwyn K. SharmaiD· 2 shared Jill P. MesiroviD· 2 shared Adam M. BurgoyneiD· 1 shared Adrian Sanchez-Fdez· 1 shared Andrea CalifanoiD· 1 shared Chih‐Min Tang· 1 shared Denisse EvansiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersCancer Biology

Alexander T. WenzelORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintApr 21, 2025

Single Nuclei-Derived Molecular Subtypes of Gastrointestinal Stromal Tumors Correlate with Clinicopathologic Features and Predict Clinical Outcomes

Ashwyn K. Sharma, Alexander T. Wenzel, John Jun…·Jason Keith Sicklick

The paper identifies six molecular subtypes of GIST using single nucleus RNA sequencing and correlates them with clinicopathologic features and clinical outcomes.

DOI 10.1101/2025.04.21.647322

humanscRNA-seq

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BioinformaticsJournal of Bioinformatics and Systems BiologyPeer-reviewedJan 1, 2023

NMFClustering: Accessible NMF-based clustering utilizing GPU acceleration

Ted Liefeld, Edwin Huang, Alexander T. Wenzel…·Michael M. Reich

NMFClustering provides GPU-accelerated non-negative matrix factorization for efficient clustering of large RNA-Seq and scRNA-seq datasets.

11 citations

scRNA-seqbulk RNA-seq

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