Author

Arif Canakoglu

Politecnico di MilanoORCID 0000-0003-4528-6586Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Research Focus:GWAS / association mapping· 1 Assay:GWAS summary statistics· 1 Organism:human· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Anna BernasconiiD· 3 shared Pietro PinoliiD· 3 shared Stefano CeriiD· 3 shared Adriana Garmendia· 1 shared Alessandra RenieriiD· 1 shared Alex Hawkins‐HookeriD· 1 shared Alexander TeumeriD· 1 shared Alicia R. MartiniD· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersGenomics

Anna BernasconiORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

BioinformaticsGenome biologyPeer-reviewedApr 18, 2023

The ENCODE Imputation Challenge: A critical assessment of methods for cross-cell type imputation of epigenomic profiles

Jacob Matthew Schreiber, Carles A. Boix, Jin wook Lee…·ENCODE Imputation Challenge Participants

The paper evaluates 23 imputation models for cross-cell type epigenomic data, finding quality assessment challenging due to distributional shifts, data availability, and redundant metrics.

16 citations

ChIP-seqmachine learning (classical)

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Genetic & Genomic MedicineResearch at the University of Copenhagen (University of Copenhagen)Peer-reviewedJan 1, 2021

Mapping the human genetic architecture of COVID-19 by worldwide meta-analysis

Mari Niemi, Juha M Karjalainen, Rachel G. Liao…·Bahareh Sedaghati-khayat

This study identifies 13 genome-wide significant loci associated with SARS-CoV-2 infection or severe COVID-19 through a global meta-analysis of 49,562 patients.

10 citations

humanGWAS summary statistics

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GenomicsNucleic Acids ResearchPeer-reviewedSep 21, 2020

ViruSurf: an integrated database to investigate viral sequences

Arif Canakoglu, Pietro Pinoli, Anna Bernasconi…·Stefano Ceri

ViruSurf is a database that integrates viral sequences and metadata from multiple sources, enabling complex searches to support research on viral sequences and their variants.

49 citations

database / resource

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GenomicsbioRxivPreprintApr 29, 2020

Empowering Virus Sequences Research through Conceptual Modeling

Anna Bernasconi, Arif Canakoglu, Pietro Pinoli, Stefano Ceri

The paper introduces the Viral Conceptual Model (VCM) to organize and query virus sequence data, demonstrating its utility with SARS-CoV-2 and linking it to host phenotype data.

6 citations

viruswhole-genome sequencing

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