Nathan Foulquier

BiomiX 3.0 is a multi-omics integration platform that introduces PRAMIGO, a supervised heterogeneous graph transformer, and benchmarks five methods on CLL and PTB datasets, showing that no single method captures all biologically relevant signals.

FloREN improves patient-level sample stratification and biomarker discovery by modeling single-cell data as an interpretable graph transformer network for immune regulatory analysis.

This study compares immune infiltration in ICI-induced lichen planus and non-drug-related lichen planus, finding reduced T-cell infiltration and increased B-cell frequency in the former.

BiomiX automates multiomics data analysis and integration, enabling efficient comparison of two cohorts through MOFA and providing interpretable results using literature and clinical data.