Author

Haoyu Yang

Australian National UniversityORCID 0000-0003-4625-8878Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Haoyu Yang1 paper · Shanxi Agricultural University

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:scATAC-seq· 1

Frequent Co-Authors

Daniel V. BrowniD· 1 shared Jafar S. JabbariiD· 1 shared Jiayu WeniD· 1 shared Jingsen YangiD· 1 shared Lixinyu LiuiD· 1 shared Matthew E. RitchieiD· 1 shared Mei R. M. DuiD· 1 shared Oliver VoogdiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Daniel V. BrownORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 9, 2026

scPolyA enables efficient, interactive and agent-guided alternative polyadenylation analysis in single-cell and spatial transcriptomes

Jingsen Yang, Haoyu Yang, Lixinyu Liu, Jiayu Wen

scPolyA provides a framework for analyzing alternative polyadenylation in single-cell and spatial transcriptomes, revealing APA patterns in cancer tissues.

DOI 10.64898/2026.11.05.764757

𝕏 PostBluesky

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedOct 11, 2023

scPipe: An extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor

Shanika L. Amarasinghe, Phil Yang, Oliver Voogd…·Matthew E. Ritchie

scPipe provides a preprocessing pipeline for single-cell ATAC-Seq and multi-modal data in R/Bioconductor, enabling quality control and downstream analysis.

2 citations

scATAC-seqscRNA-seq

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