Author

Allen R. Place

University of Maryland, BaltimoreORCID 0000-0003-4692-2388Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Assay:metagenomics· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Tsvetan R. BachvaroffiD· 2 shared Aaron M. WatsoniD· 1 shared Bhargav SrinivasaniD· 1 shared Can FirtinaiD· 1 shared Ernest P. Williams· 1 shared Ernest ZhangiD· 1 shared Grant D. Jones· 1 shared Mary E.M. LarkiniD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersBioinformatics

Tsvetan R. BachvaroffORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 11, 2026

RawMod: Modification-Agnostic Detection of DNA Base Modifications from Nanopore Signal Pileups

Bhargav Srinivasan, Sabeena Nazar, Vir Gandhi…·Can Firtina

RawMod detects epigenetic DNA modifications without requiring control data or prior knowledge of modification types, achieving high accuracy across multiple modification types.

DOI 10.64898/2026.11.10.765445

long-read sequencingdeep learning

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Molecular BiologybioRxivPreprintFeb 20, 2024

Regulated mRNA recruitment in dinoflagellates is reflected in hyper-variable mRNA spliced leaders and novel eIF4Es

Grant D. Jones, Ernest P. Williams, Saddef Haq…·Rosemary Jagus

This study identifies hyper-variable mRNA spliced leaders and novel eIF4E proteins in dinoflagellates, highlighting their role in translational regulation.

1 citation

metagenomicsstatistical model

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Molecular BiologybioRxivPreprintJun 12, 2019

Gluten-free Fish? Marine Carnivores Cobia (Rachycentron canadum) and European Sea Bass (Dicentrarchus labrax) Have Different Tolerances to Dietary Wheat Gluten

Mary E.M. Larkin, Aaron M. Watson, Allen R. Place

The paper evaluates the effects of dietary wheat gluten on growth, survival, and physiological responses in juvenile cobia and European sea bass, finding differential tolerances between species.

1 citation

experimental assay

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