Author

Cole Ingamells

University of California, DavisORCID 0000-0003-4706-2666Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Organism:zebrafish· 3 Assay:bulk RNA-seq· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:CRISPR screen· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Gulhan KayaiD· 3 shared José M. Uribe‐SalazariD· 3 shared Megan Y. DennisiD· 3 shared Daniela C. SotoiD· 2 shared KaeChandra WeyenbergiD· 2 shared Keiko HinoiD· 2 shared Nicholas K. HaghaniiD· 2 shared Sergi SimóiD· 2 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersGenomics

Gulhan KayaORCID

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3 papers

Recent·Most cited

GenomicsCellPeer-reviewedSep 1, 2025

Human-specific gene expansions contribute to brain evolution

Daniela C. Soto, José M. Uribe‐Salazar, Gulhan Kaya…·Megan Y. Dennis

The paper identifies human-specific gene expansions linked to brain evolution by analyzing genome sequences and functional models in zebrafish.

25 citationstop 2%

𝕏 PostBluesky

GenomicsbioRxivPreprintSep 11, 2024

Zebrafish models of human-duplicated SRGAP2 reveal novel functions in microglia and visual system development

José M. Uribe‐Salazar, Gulhan Kaya, KaeChandra Weyenberg…·Megan Y. Dennis

This paper uses zebrafish to study SRGAP2 duplication, showing its role in microglia and visual system development, with phenotypes resembling human conditions.

3 citations

zebrafishbulk RNA-seq

𝕏 PostBluesky

GeneticsBMC GenomicsPeer-reviewedJan 5, 2022

Evaluation of CRISPR gene-editing tools in zebrafish

José M. Uribe‐Salazar, Gulhan Kaya, Aadithya Sekar…·Megan Y. Dennis

The paper evaluates CRISPR gene-editing tools in zebrafish by comparing in vivo editing efficiencies with computational predictions and analyzing control embryos for spurious effects.

49 citations

zebrafishbulk RNA-seq

𝕏 PostBluesky