Author

Roy T. Kamimura

Lawrence Berkeley National LaboratoryORCID 0000-0003-4762-5844Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Christopher S. HenryiD· 2 shared Janaka N. EdirisingheiD· 2 shared Aaron A. BestiD· 1 shared Adam P. ArkiniD· 1 shared Alexander BraceiD· 1 shared Annette GreineriD· 1 shared Ben P. Bowen· 1 shared Benjamin H. AlleniD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersSystems Biology

Christopher S. HenryORCID

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2 papers

Recent·Most cited

Systems BiologybioRxivPreprintAug 11, 2023

Machine Learning-Driven Phenotype Predictions based on Genome Annotations

Janaka N. Edirisinghe, Samaksh Goyal, Alexander Brace…·Christopher S. Henry

This paper develops a machine learning framework using genome annotations to predict bacterial phenotypes, achieving high accuracy for Gram-stain type and respiration type.

11 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

BioinformaticsNature BiotechnologyPeer-reviewedJul 1, 2018

✦ In-depth digest

The DOE Systems Biology Knowledgebase (KBase)

Adam P. Arkin, Robert W. Cottingham, Christopher S. Henry…·Dantong Yu

Open-source KBase platform unites reference genomes and biochemistry, over 70 apps, Jupyter-based Narratives with provenance, and a Docker SDK for reproducible plant and microbial systems biology.

1,624 citationstop 1%

multiple speciesbacteria (other)

𝕏 PostBluesky