Author

Carla Cristina da Silva

Universidade Estadual de Campinas (UNICAMP)ORCID 0000-0003-4779-0014Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 5

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 4 Research Focus:differential expression· 4 Approach:statistical model· 3 Approach:experimental assay· 2 Research Focus:database / resource· 1 Organism:fungi (other)· 1 Research Focus:gene regulatory network inference· 1 Organism:plant (other)· 1

Frequent Co-Authors

Anete Pereira de SouzaiD· 5 shared Danilo Augusto SforçaiD· 4 shared Alexandre Hild AonoiD· 2 shared Maria Augusta Crivelente HortaiD· 2 shared Paulo Henrique CampiteliiD· 2 shared Rafaela Rossi RosoleniD· 2 shared Renato VicentiniiD· 2 shared Arnaud BelleciD· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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5 shared papersGenomics

Anete Pereira de SouzaORCID

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5 papers

Recent·Most cited

GenomicsbioRxivPreprintMay 8, 2024

Identifying Candidate Genes for Sugar Accumulation in Sugarcane Cultivars: From a Syntenic Genomic Region to a Gene Coexpression Network

Mônica Letícia Turibio Martins, Danilo Augusto Sforça, Luís Paulo dos Santos…·Anete Pereira de Souza

The paper identifies three candidate genes for sugar accumulation in sugarcane using synteny analysis, BAC library screening, RNA-seq, and coexpression network analysis.

DOI 10.1101/2024.05.08.593213

bulk RNA-seqstatistical model

𝕏 PostBluesky

GenomicsbioRxivPreprintSep 28, 2023

Targeting lignocellulolytic gene clusters in novel Trichoderma atroviride and Trichoderma harzianum strains through Bac-guided analysis

Paulo Henrique Campiteli, Maria Augusta Crivelente Horta, Rafaela Rossi Rosolen…·Anete Pereira de Souza

The paper identifies novel lignocellulolytic gene clusters in Trichoderma species by analyzing genomic regions enriched in degradative enzymes using BAC methodology and RNA-seq data.

DOI 10.1101/2023.09.28.559926

bulk RNA-seqexperimental assay

𝕏 PostBluesky

GenomicsMolecular Genetics and GenomicsPeer-reviewedApr 5, 2023

Whole-Genome Sequencing and Comparative Genomic Analysis of Potential Biotechnological Strains of Trichoderma harzianum, Trichoderma atroviride, and Trichoderma reesei

Rafaela Rossi Rosolen, Maria Augusta Crivelente Horta, Paulo Azevedo…·Anete Pereira de Souza

The paper performs whole-genome sequencing and comparative genomic analysis of Trichoderma strains to assess genetic diversity and identify structural variants.

25 citations

fungi (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsFrontiers in Plant SciencePeer-reviewedDec 13, 2021

Temporal Gene Expression in Apical Culms Shows Early Changes in Cell Wall Biosynthesis Genes in Sugarcane

Guilherme Kenichi Hosaka, Fernando Henrique Correr, Carla Cristina da Silva…·Gabriel Rodrigues Alves Margarido

The paper identifies differentially expressed genes related to sucrose metabolism and cell wall biosynthesis in sugarcane apical culms across developmental stages and genotypes.

13 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky

GenomicsbioRxivPreprintNov 2, 2021

A deeper cascade of mechanisms involved in cold resistance in Hevea brasiliensis

Carla Cristina da Silva, Stephanie Karenina Bajay, Alexandre Hild Aono…·Renato Vicentini

The paper identifies gene expression patterns and regulatory mechanisms in cold-resistant rubber tree clones using RNA-seq and gene coexpression network analysis.

DOI 10.1101/2021.11.02.466997

plant (other)bulk RNA-seq

𝕏 PostBluesky