Author

Yoon Jung Kim

Children's Medical CenterORCID 0000-0003-4792-0595Unclaimed ORCID profile · follow to get notified of new preprints

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Yoon Jung Kim1 paper

Biology Disciplines

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Cancer Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:Hi-C· 1 Organism:human· 1 Research Focus:spatial domain detection· 1 Approach:statistical model· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Anton George HensseniD· 1 shared Biswanath ChowdhuryiD· 1 shared Chaohui LiiD· 1 shared Guy NiriD· 1 shared Howard Y. ChangiD· 1 shared Jens LuebeckiD· 1 shared Jessica AlsingiD· 1 shared Jun Yi Stanley LimiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperCancer Biology

Anton George HenssenORCID

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1 paper

Recent·Most cited

Reconstructing the three-dimensional architecture of extrachromosomal DNA with ec3D

Biswanath Chowdhury, Kaiyuan Zhu, Chaohui Li, Jessica Alsing, Jens Luebeck, Maria E. Stefanova, Owen S. Chapman, Katerina Kraft, Shu Zhang, Jun Yi Stanley Lim, Yipeng Xie, Yoon Jung Kim, Sihan Wu, Lukas Chávez, Guy Nir, , Vineet Bafna

The paper introduces ec3D, a method to reconstruct 3D structures of ecDNA from Hi-C data, revealing spherical configurations and unique long-range interactions in cancer.

Nature Communications · Dec 20, 2025Peer-reviewedCancer Biology