Author

Nishadi H. De Silva

European Bioinformatics InstituteORCID 0000-0003-4802-2375Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Organism:virus· 1

Frequent Co-Authors

Robert D. FinniD· 2 shared Adam FrankishiD· 1 shared Andrea WinterbottomiD· 1 shared Andrew D. YatesiD· 1 shared Andrew PartoniD· 1 shared Anja ThormanniD· 1 shared Anne Parker· 1 shared Astrid GalliD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Robert D. FinnORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJan 22, 2025

mettannotator: a comprehensive and scalable Nextflow annotation pipeline for prokaryotic assemblies

Tatiana A. Gurbich, Martín Beracochea, Nishadi H. De Silva, Robert D. Finn

Mettannotator is a scalable Nextflow pipeline for prokaryotic genome annotation, capable of handling both known and novel taxa, and it produces GFF files for downstream analysis.

8 citations

bacteria (other)whole-genome sequencing

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BioinformaticsNucleic Acids ResearchPeer-reviewedSep 20, 2021

The Ensembl COVID-19 resource: Ongoing integration of public SARS-CoV-2 data

Nishadi H. De Silva, Jyothish N Nair Thulasee Bhai, Marc Chakiachvili…·Andrew D. Yates

The paper describes the Ensembl COVID-19 resource, which integrates SARS-CoV-2 genomic data and variant annotations to support research on virus variants and their impact on therapeutics and vaccines.

9 citations

viruswhole-genome sequencing

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