Tatiana A. Gurbich

MAP annotates mobilome elements and their functional cargo in prokaryotic (meta)genomic assemblies, enabling identification of composite elements like ARG-carrying integrons.

The paper introduces CABBAGE, a large-scale AMR genotype-phenotype database linking bacterial genomes to antibiotic susceptibility data and metadata, enabling analysis of resistance trends and predictive method benchmarks.

The paper introduces a fast clustering tool for bacterial genomes, enabling efficient analysis of millions of genomes and revealing taxonomic insights.

RNAcentral integrates literature and gene-level data to enhance non-coding RNA sequence analysis and functional understanding.

Mettannotator is a scalable Nextflow pipeline for prokaryotic genome annotation, capable of handling both known and novel taxa, and it produces GFF files for downstream analysis.

CELEBRIMBOR improves core gene identification in metagenome-assembled genomes by adjusting frequency thresholds based on genome completeness.

ClassifyCNV annotates copy-number variants using ACMG guidelines to assess pathogenicity, providing classification scores and gene lists for variant interpretation.