Author

David A. Sivak

Simon Fraser UniversityORCID 0000-0003-4815-4722Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

David A. Sivak1 paper

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Ecology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Approach:statistical model· 2 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:metagenomics· 1 Research Focus:perturbation response prediction· 1

Frequent Co-Authors

Christopher S. McGinnisiD· 1 shared Eric D. ChowiD· 1 shared Eric W. JonesiD· 1 shared Inna-Marie Strazhnik· 1 shared Jialong JiangiD· 1 shared John Hanna· 1 shared Jong Hyeok ParkiD· 1 shared Jost VielmetteriD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Christopher S. McGinnisORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsCellPeer-reviewedMay 12, 2026

D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response

Jialong Jiang, Sisi Chen, Tiffany Tsou…·Matt W. Thomson

8 citationstop 1%

𝕏 PostBluesky

EcologyProceedings of the National Academy of SciencesPeer-reviewedMar 4, 2026

How to quantify immigration from community abundance data using the Neutral Community Model

Ramis Rafay, Eric W. Jones, David A. Sivak, S. Jane Fowler

This study introduces two new methods to estimate immigration rates in microbial communities using the Neutral Community Model, showing they require less sampling than existing methods.

3 citationstop 2%

metagenomicsstatistical model

𝕏 PostBluesky