Kimmo Sirén

The paper examines how different milk pretreatment methods affect microbiome dynamics during cheese production using metagenomic sequencing and identifies key microbial contributors to cheese quality.

This paper presents the first genome assembly and pangenome of Neonectria neomacrospora, revealing genetic diversity and functional features related to its plant pathogenic lifestyle.

The paper introduces a machine learning method for detecting prophages in bacterial genomes, finding more phages than existing tools while being faster.

This study uses whole-genome sequencing to analyze the population genetics of Neonectria neomacrospora, revealing clade divergence and gene flow patterns in Europe.