Thomas Nußbaumer

The paper analyzes gene expression and DNA methylation in Arabidopsis shoot stem cells, revealing transient transposon activation and epigenetic reprogramming during their transition to reproductive lineage.

Gexplora is a Python-based GUI tool that visualizes genomic element density and integrates external database information for genomic analysis.

TraitCorr identifies genes significantly correlated with phenotypic traits using RNA-seq and microarray data.

MicrobComp is a graphical tool for comparing taxonomic differences between two amplicon datasets to aid in interpreting microbial community data.

The paper introduces an R package for analyzing intra-species and inter-species protein-protein interactions in Arabidopsis thaliana, with features for comparing centrality measurements and orthologous proteins.

BioSankey visualizes microbial communities and gene expression over time using Sankey diagrams, generating interactive HTML pages for analysis.

Host_microbe_mapper is a computational pipeline for analyzing dual RNA-seq data to quantify and interpret host-microbe expression and detect microbial contaminations.