Author

Keitaro Kume

University of TsukubaORCID 0000-0003-4937-345XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Andrew ToselandiD· 1 shared Bernard HenrissatiD· 1 shared Cock van OosterhoutiD· 1 shared Daniel MoogiD· 1 shared Goro TanifujiiD· 1 shared Hideaki MiyashitaiD· 1 shared Joe WiniD· 1 shared Kaori Oyama· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperGenomics

Andrew ToselandORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 1, 2025

Molecular evolution of the Wood-Ljungdahl pathway and the reductive glycine pathway in Thermodesulfobacteriota

Tomoyuki Wakashima, Keitaro Kume, Yoko Chiba

The paper investigates the evolutionary history of carbon fixation pathways in Thermodesulfobacteriota, finding that their common ancestor had both the Wood-Ljungdahl and reductive glycine pathways, with subsequent gene loss and horizontal gene transfer shaping current diversity.

DOI 10.1101/2025.09.01.672775

statistical modelphylogenetics / evolution

𝕏 PostBluesky

GenomicsScience AdvancesPeer-reviewedApr 29, 2022

Genome evolution of a non-parasitic secondary heterotroph, the diatom Nitzschia putrida

Ryoma Kamikawa, Takako Mochizuki, Mika Sakamoto…·Yasukazu Nakamura

This study reports the diploid genome of the free-living diatom Nitzschia putrida and identifies genetic changes associated with its transition from a photosynthetic to a non-parasitic secondary heterotrophic lifestyle.

26 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky